PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00134933001
Common NameGSBRNA2T00134933001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 490aa    MW: 51668 Da    PI: 7.4638
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00134933001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-056183123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C+k F r  nL+ H r H
  GSBRNA2T00134933001 61 FVCEICSKGFQRDQNLQLHRRGH 83
                         89*******************88 PP

2zf-C2H215.64.5e-05137159123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC++C+ks+  +s+ k H + +
  GSBRNA2T00134933001 137 YKCEKCSKSYAVQSDWKAHSKIC 159
                          9******************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.8E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.36E-76083No hitNo description
SMARTSM003550.0366183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8876183IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM0035581102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.9E-5125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.36E-7132157No hitNo description
SMARTSM0035565137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MPVDLDDSST VSGDASVSST GNQNPPPQSA VKKKRNLPGM PDPDSEVIAL SPKTLMATNR  60
FVCEICSKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVRKK VYVCPVSGCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKYKCE KCSKSYAVQS DWKAHSKICG SKEYRCDCGT LFSRRDSFIT  180
HRAFCDVLAE ESAKNHTQSK KLYPETVSES QQKSPAAVDS PPPSPSPPPV SVSVSVESET  240
EPEPANIASS LVLPIQDSSD EPENNTLEVI MEEAPRTIGL NGSDDHSNNN KSVYAALFAS  300
SSSSPSLYAA SSTPSPSLFP PSSSMEPISL CLSTTGPSLF GATIQDPPPP HFLTPLLPPP  360
PQPAISATAL LQKAAQMGST GSGGSLLRGL GIVSTTSSPM ELSSHEAGFG LGLGLPCSSG  420
SGLKELMMGN SSVFDPKQTT LDFLGLGRAV GNNNPGGGGL SSALWGGGGG MDVFGSGELS  480
DKDTGRRSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18799KLRQRSSKEVRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.71900.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00134933001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892250.0AC189225.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB011P07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112327.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9LVQ70.0IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLA0A078CX820.0A0A078CX82_BRANA; BnaC09g07830D protein
STRINGBra037151.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-172C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]